Publications using eVOC

(Selection only)

• Janet Kelso, Johann Visagie, Gregory Theiler, Alan Christoffels, Soraya Bardien-Kruger, Damian Smedley, Darren Otgaar, Gary Greyling, Victor Jongeneel, Mark McCarthy, Tania Hide, Winston Hide. eVOC: A Controlled Vocabulary for Gene Expression Data. Genome Research 2003 13: 1222-1230.
• Y.-T. Chen, C. A. Venditti, G. Theiler, B. J. Stevenson, C. Iseli, A. O. Gure, C. V. Jongeneel, L. J. Old, and A. J. G. Simpson. Identification of HORMAD 1?, an immunogenic cancer/testis antigen encoding a putative meiosis-related protein. Cancer Immunity, July 7, 2005; 5(9)

• E. Eyras, M. Caccamo, V. Curwen, and M. Clamp. EST Genes?: Alternative Splicing From ES Ts? in Ensembl. Genome Res., May 1, 2004; 14(5): 976 - 987.

• N. Kirschbaum-Slager, R. B. Parmigiani, A. A. Camargo, and S. J. de Souza. Identification of human exons overexpressed in tumors through the use of genome and expressed sequence data. Physiol Genomics, May 11, 2005; 21(3): 423 - 432.

• S. B. Montgomery, O. L. Griffith, M. C. Sleumer, C. M. Bergman, M. Bilenky, E. D. Pleasance, Y. Prychyna, X. Zhang, and S. J. Jones. O Reg Anno?: an open access database and curation system for literature-derived promoters, transcription factor binding sites and regulatory variation. Bioinformatics, March 1, 2006. 22(5): 637-40.

• N. Vinckenbosch, I. Dupanloup, and H. Kaessmann. Evolutionary fate of retroposed gene copies in the human genome. PNAS, February 28, 2006; 103(9): 3220 - 3225.

• C. Yamasaki, K. O. Koyanagi, Y. Fujii, T. Itoh, R. Barrero, T. Tamura, Y. Yamaguchi-Kabata, M. Tanino, J. Takeda, S. Fukuchi, S. Miyazaki, N. Nomura, S. Sugano, T. Imanishi, and T. Gojobori. Investigation of protein functions through data-mining on integrated human transcriptome database, H-Invitational database (H-Inv DB?). Gene, December 30, 2005: 364(30): 99-107.

Software and databases utilizing eVOC

• Ensembl -- Gene expression
• ATD/AltSplice -- Expression of transcript isoforms
• LICR MPSS project -- Gene expression
• H-Inv -- Gene expression
• Fantom3 -- Gene expression and transcription start sites via CAGE data
• LifeDB -- Digital Northern
• BRENDA -- Enzyme sources
• University of Helsinki / Systems Biology -- Annotation of Affymetrix chips
• Human Protein Reference Database (HPRD) -- Protein sources
• UniProt -- Protein sources
• Pazar -- Transcription Factor sources
• ORegAnno -- Transcription Factor sources

Citing eVOC

The vocabulary and annotations of cDNA and SAGE libraries provided are the result of a collaborative research and development project between the South African National Bioinformatics Institute at University of Western Cape and Electric Genetics PTY Ltd and initial funding was provided by the South African Department of Arts, Culture, Science and Technology.

The eVOC vocabularies and annotations provided here are in the public domain. There are no restrictions on the use of this data, though third parties are requested to give appropraite acknowledgement to the eVOC consortium.

To reference eVOC please cite:

To reference the developmental human and mouse eVOC ontologies please cite:

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Page last modified on June 13, 2007, at 02:19 PM